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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
876
ChIP-seq
230
ATAC-seq
143
DNase-seq
92
total RNA-seq
85
RNA microarray
70
single cell RNA-seq
27
snATAC-seq
26
WGBS
10
Hi-C
7
RRBS
4
FAIRE-seq
4
MeRIP-seq
1
pCHi-C
Assay category
876
DNA binding
404
DNA accessibility
162
Transcription
33
DNA methylation
10
3D chromatin structure
Target of assay
601
histone modification
600
histone
313
narrow histone mark
287
broad histone mark
183
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
213
October, 2019
169
August, 2017
130
August, 2021
128
June, 2019
108
May, 2019
93
February, 2021
82
November, 2017
80
April, 2019
74
October, 2018
64
February, 2023
64
May, 2022
50
May, 2020
48
December, 2017
47
September, 2023
40
May, 2024
26
November, 2018
25
July, 2019
23
October, 2017
21
November, 2019
19
April, 2020
15
May, 2023
10
March, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
July, 2018
4
November, 2020
2
May, 2021
1
August, 2022
1
December, 2019
1
January, 2018
Available data
1860
bam
1712
bigWig
tsv
903
bed narrowPeak
520
bigBed narrowPeak
375
fastq
223
tagAlign
169
bed bed3+
165
bed broadPeak
156
txt
141
bigBed broadPeak
64
xls
22
bed bedMethyl
22
bigBed bedMethyl
9
hic
8
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1566
Homo sapiens
Biosample type
1575
tissue
801
primary cell
543
cell line
263
in vitro differentiated cells
6
stem cell
Organ
287
kidney
242
brain
230
pancreas
207
liver
202
heart
119
blood vessel
119
vasculature
115
limb
100
bone element
90
connective tissue
89
adipose tissue
musculature of body
69
artery
eye
38
nerve
24
spleen
19
lung
18
ureter
16
skeleton
12
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
1478
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
901
GRCh38
750
hg19
Lab
1224
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
87
inconsistent ontology term
27
inconsistent control
1
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
tsv
organ_slims!
eye
large intestine
musculature of body
BIOSAMPLE
ASSAY
1575 results
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ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
RNA microarray
single cell RNA-seq
snATAC-seq
WGBS
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
pCHi-C
tissue
kidney
27
75
13
49
59
6
1
1
1
liver
145
20
2
20
1
3
1
1
islet of Langerhans
69
66
1
17
7
3
1
1
4
bone element
84
heart left ventricle
35
2
3
4
1
1
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