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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
880
ChIP-seq
258
ATAC-seq
177
DNase-seq
106
total RNA-seq
84
RNA microarray
71
single cell RNA-seq
27
snATAC-seq
25
WGBS
16
Hi-C
11
RRBS
5
pCHi-C
4
FAIRE-seq
4
MeRIP-seq
Assay category
880
DNA binding
466
DNA accessibility
177
Transcription
36
DNA methylation
16
3D chromatin structure
Target of assay
616
histone modification
615
histone
320
narrow histone mark
295
broad histone mark
178
control
88
transcription factor
28
RNA binding protein
2
chromatin remodeller
2
nucleotide modification
Date released
234
October, 2019
188
August, 2017
163
June, 2019
129
August, 2021
115
May, 2019
93
February, 2021
91
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
66
May, 2022
50
May, 2020
48
December, 2017
47
September, 2023
40
May, 2024
30
July, 2019
22
October, 2017
21
November, 2019
18
April, 2020
17
November, 2018
15
May, 2023
12
March, 2020
8
January, 2021
6
September, 2017
5
March, 2019
4
July, 2018
4
November, 2020
2
January, 2018
2
May, 2021
1
August, 2022
1
December, 2019
Available data
1876
bam
1750
bigWig
tsv
964
bed narrowPeak
542
bigBed narrowPeak
346
fastq
231
tagAlign
206
bed broadPeak
204
bed bed3+
175
bigBed broadPeak
157
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1668
Homo sapiens
Biosample type
1668
tissue
818
primary cell
539
cell line
263
in vitro differentiated cells
4
stem cell
Organ
287
kidney
242
brain
223
pancreas
207
liver
202
heart
119
blood vessel
119
vasculature
115
limb
100
bone element
89
connective tissue
88
adipose tissue
75
musculature of body
69
artery
51
eye
38
nerve
spleen
18
lung
18
ureter
16
skeleton
12
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
1572
AMP
47
KPMP
31
T1D
18
LungMap
Genome assembly (visualization)
920
GRCh38
817
hg19
Lab
1318
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
18
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
2
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
files.file_type!
tsv
organ_slims!
spleen
BIOSAMPLE
ASSAY
1668 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
RNA microarray
single cell RNA-seq
snATAC-seq
WGBS
Hi-C
RRBS
pCHi-C
FAIRE-seq
MeRIP-seq
tissue
kidney
27
75
13
49
59
6
1
1
1
liver
145
20
2
20
1
3
1
1
islet of Langerhans
71
67
1
31
7
3
1
4
1
4
bone element
84
heart left ventricle
35
2
3
4
1
1
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