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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
ChIP-seq
67
ATAC-seq
19
total RNA-seq
11
snATAC-seq
10
WGBS
9
DNase-seq
4
Hi-C
4
MeRIP-seq
2
FAIRE-seq
2
RRBS
1
RNA microarray
Assay category
190
DNA binding
89
DNA accessibility
19
Transcription
12
DNA methylation
4
3D chromatin structure
Target of assay
105
histone
105
histone modification
61
broad histone mark
53
control
44
narrow histone mark
34
transcription factor
13
RNA binding protein
2
nucleotide modification
Date released
115
August, 2017
74
October, 2018
24
May, 2022
21
November, 2019
19
February, 2023
8
January, 2021
8
November, 2018
6
March, 2020
6
October, 2017
6
September, 2017
5
June, 2019
5
March, 2019
4
July, 2018
4
November, 2020
4
October, 2019
2
August, 2021
2
July, 2019
2
May, 2019
1
August, 2022
1
January, 2018
1
May, 2021
1
May, 2023
Available data
869
bam
796
bigWig
tsv
256
fastq
136
bed narrowPeak
72
bigBed narrowPeak
33
bed bed3+
24
tagAlign
23
bed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
8
bigBed broadPeak
6
txt
3
bedpe bed3+
3
hic
1
bedpe
Organism
311
Homo sapiens
Biosample type
319
tissue
238
primary cell
58
cell line
4
in vitro differentiated cells
Organ
287
kidney
242
brain
230
pancreas
207
liver
202
heart
119
blood vessel
119
vasculature
115
limb
100
bone element
90
connective tissue
89
adipose tissue
75
musculature of body
69
artery
51
eye
38
nerve
24
spleen
19
lung
18
ureter
16
skeleton
12
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
289
AMP
30
T1D
Genome assembly (visualization)
169
hg19
141
GRCh38
Lab
257
AMP-T2D consortium
51
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
audit script error
1
inconsistent ontology term
Audit category:
22
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
files.file_type!
tsv
BIOSAMPLE
ASSAY
319 results
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ChIP-seq
ATAC-seq
total RNA-seq
snATAC-seq
WGBS
DNase-seq
Hi-C
MeRIP-seq
FAIRE-seq
RRBS
RNA microarray
tissue
islet of Langerhans
50
57
17
7
1
3
4
1
1
body of pancreas
35
4
2
4
subcutaneous abdominal adipose tissue
36
3
pancreas
16
1
4
2
2
1
1
1
endocrine pancreas
16
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