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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 907ChIP-seq
  • 259ATAC-seq
  • 178DNase-seq
  • 106total RNA-seq
  • 85RNA microarray
  • 71single cell RNA-seq
  • 28snATAC-seq
  • 27WGBS
  • 16Hi-C
  • 11RRBS
  • 5pCHi-C
  • 4FAIRE-seq
  • 4MeRIP-seq
Assay category
  • 907DNA binding
  • 469DNA accessibility
  • 177Transcription
  • 38DNA methylation
  • 163D chromatin structure
Target of assay
  • 628histone modification
  • 627histone
  • 324narrow histone mark
  • 303broad histone mark
  • 187control
  • 94transcription factor
  • 28RNA binding protein
  • 3other context
  • 3other post-translational modification
  • 2chromatin remodeller
  • 2nucleotide modification
Date released
  • 234October, 2019
  • 195August, 2017
  • 163June, 2019
  • 130August, 2021
  • 115May, 2019
  • 93February, 2021
  • 91February, 2023
  • 82November, 2017
  • 80April, 2019
  • 74October, 2018
  • 66May, 2022
  • 50May, 2020
  • 48December, 2017
  • 47September, 2023
  • 40May, 2024
  • 30July, 2019
  • 26November, 2018
  • 23October, 2017
  • 21November, 2019
  • 19April, 2020
  • 15May, 2023
  • 12March, 2020
  • 8January, 2021
  • 7December, 2018
  • 7January, 2019
  • 6September, 2017
  • 5March, 2019
  • 4July, 2018
  • 4November, 2020
  • 2January, 2018
  • 2May, 2021
  • 1August, 2022
  • 1December, 2019
Available data
  • 1907bam
  • 1772bigWig
  • tsv
  • 984bed narrowPeak
  • 561bigBed narrowPeak
  • 377fastq
  • 238tagAlign
  • 213bed broadPeak
  • 205bed bed3+
  • 176bigBed broadPeak
  • 157txt
  • 64xls
  • 25bed bedMethyl
  • 25bigBed bedMethyl
  • 11hic
  • 10bedpe bed3+
  • 6csv
  • 5bed bed3
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 1692Homo sapiens
Biosample type
  • 1701tissue
  • 818primary cell
  • 543cell line
  • 263in vitro differentiated cells
  • 6stem cell
Organ
  • 287kidney
  • 242brain
  • 230pancreas
  • 207liver
  • 202heart
  • 119blood vessel
  • 119vasculature
  • 115limb
  • 100bone element
  • 90connective tissue
  • 89adipose tissue
  • 75musculature of body
  • 69artery
  • 51eye
  • 38nerve
  • 24spleen
  • 19lung
  • 18ureter
  • 16skeleton
  • 12epithelium
  • 4gonad
  • 4ovary
  • 2pituitary gland
  • 1lymph node
  • 1pericardium
  • 1skin of body
  • 1thymus
Project
  • 1604AMP
  • 47KPMP
  • 31T1D
  • 19LungMap
Genome assembly (visualization)
  • 942GRCh38
  • 837hg19
Lab
  • 1350AMP-T2D consortium
  • 142Katalin Susztak, Upenn
  • 52Kyle Gaulton, UCSD
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 40Patrick T. Ellinor, Broad
  • 19Xin Sun, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 3Bing Ren, UCSD
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 88inconsistent ontology term
  • 27inconsistent control
  • 2audit script error
Audit category:
  • 26missing controlled_by
Audit category:
  • 6inconsistent control read length
  • 1inconsistent assembly
files.file_type!
  • tsv
BIOSAMPLE
ASSAY

1701 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
RNA microarray
single cell RNA-seq
snATAC-seq
WGBS
Hi-C
RRBS
pCHi-C
FAIRE-seq
MeRIP-seq
tissue
kidney27751349596111
liver145202201311
islet of Langerhans7167131731414
bone element84
heart left ventricle3523411
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