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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
883
total RNA-seq
725
ChIP-seq
258
ATAC-seq
176
DNase-seq
167
single cell RNA-seq
27
snATAC-seq
25
pCHi-C
18
WGBS
16
Hi-C
16
small RNA-seq
6
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
RNA microarray
3
snDrop-seq
Assay category
1066
Transcription
725
DNA binding
464
DNA accessibility
24
DNA methylation
16
3D chromatin structure
Target of assay
504
histone
504
histone modification
274
narrow histone mark
230
broad histone mark
152
control
71
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
456
February, 2021
August, 2017
242
October, 2019
193
May, 2020
172
August, 2021
163
June, 2019
120
July, 2018
115
May, 2019
91
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
59
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1731
bam
1594
bigWig
987
tsv
918
bed narrowPeak
539
bigBed narrowPeak
196
fastq
187
bed broadPeak
179
tagAlign
177
bed bed3+
176
bigBed broadPeak
txt
64
xls
20
bed bedMethyl
20
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2328
Homo sapiens
Biosample type
2330
tissue
1024
primary cell
660
cell line
323
in vitro differentiated cells
10
stem cell
Organ
490
connective tissue
431
adipose tissue
346
pancreas
313
heart
307
liver
265
brain
237
kidney
133
blood vessel
133
vasculature
122
limb
73
artery
70
bone element
56
eye
55
musculature of body
43
nerve
25
spleen
20
lung
18
ureter
15
epithelium
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2233
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1699
GRCh38
1572
hg19
Lab
2041
AMP-T2D consortium
85
Katalin Susztak, Upenn
47
KPMP
46
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
7
inconsistent ontology term
3
audit script error
Audit category:
4
missing controlled_by
Audit category:
1
inconsistent control read length
files.file_type!
txt
vcf
month_released!
August, 2017
September, 2017
BIOSAMPLE
ASSAY
2330 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
RNA microarray
snDrop-seq
tissue
adipose tissue
382
3
1
islet of Langerhans
197
23
68
6
7
4
3
1
4
liver
167
97
20
2
1
1
1
1
kidney
27
75
13
51
6
1
1
1
heart left ventricle
3
35
2
3
18
1
4
1
1
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