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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
756
ChIP-seq
517
total RNA-seq
190
ATAC-seq
176
DNase-seq
167
single cell RNA-seq
27
snATAC-seq
24
pCHi-C
21
WGBS
16
Hi-C
14
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
RNA microarray
Assay category
756
DNA binding
698
Transcription
397
DNA accessibility
32
DNA methylation
16
3D chromatin structure
Target of assay
595
histone modification
594
histone
311
narrow histone mark
283
broad histone mark
163
control
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
240
October, 2019
216
August, 2017
193
May, 2020
162
June, 2019
120
July, 2018
111
May, 2019
107
August, 2021
90
February, 2023
82
November, 2017
74
April, 2019
67
July, 2019
59
May, 2022
47
September, 2023
41
October, 2018
40
May, 2021
39
March, 2020
39
November, 2019
35
May, 2024
23
February, 2020
22
October, 2017
19
April, 2020
18
November, 2018
17
December, 2017
14
May, 2023
12
February, 2021
8
January, 2021
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
December, 2018
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1337
bam
1215
bigWig
901
bed narrowPeak
619
tsv
491
bigBed narrowPeak
272
fastq
230
tagAlign
210
bed broadPeak
190
bed bed3+
174
bigBed broadPeak
txt
xls
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1924
Homo sapiens
Biosample type
1932
tissue
1040
primary cell
300
cell line
267
in vitro differentiated cells
9
stem cell
Organ
connective tissue
482
pancreas
471
adipose tissue
322
liver
301
heart
265
brain
172
kidney
130
blood vessel
130
vasculature
122
limb
81
musculature of body
72
artery
70
bone element
56
eye
43
nerve
20
lung
19
spleen
18
ureter
15
epithelium
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1835
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1239
GRCh38
1201
hg19
Lab
1712
AMP-T2D consortium
47
KPMP
46
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
35
Patrick T. Ellinor, Broad
21
Katalin Susztak, Upenn
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
6
inconsistent ontology term
3
audit script error
Audit category:
8
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
txt
xls
organ_slims!
connective tissue
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
1932 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
RNA microarray
tissue
islet of Langerhans
63
286
68
1
6
7
4
3
1
1
4
liver
108
167
20
2
1
1
3
1
1
1
kidney
26
11
13
51
6
1
1
1
heart left ventricle
30
3
2
3
18
1
4
1
1
left cardiac atrium
35
1
18
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