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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
967
total RNA-seq
798
ChIP-seq
259
ATAC-seq
166
single cell RNA-seq
146
DNase-seq
27
snATAC-seq
26
WGBS
24
pCHi-C
15
small RNA-seq
10
Hi-C
7
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
Assay category
1148
Transcription
798
DNA binding
436
DNA accessibility
33
DNA methylation
10
3D chromatin structure
Target of assay
543
histone modification
542
histone
292
narrow histone mark
250
broad histone mark
169
control
88
transcription factor
24
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
456
February, 2021
258
August, 2017
242
October, 2019
193
May, 2020
172
August, 2021
131
June, 2019
120
July, 2018
108
May, 2019
91
February, 2023
82
November, 2017
April, 2019
74
October, 2018
70
July, 2019
58
May, 2022
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
35
March, 2020
26
November, 2018
23
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1784
bam
1650
bigWig
1069
tsv
868
bed narrowPeak
459
bigBed narrowPeak
375
fastq
223
tagAlign
172
bed bed3+
168
bed broadPeak
txt
144
bigBed broadPeak
64
xls
22
bed bedMethyl
22
bigBed bedMethyl
9
hic
8
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2450
Homo sapiens
Biosample type
2459
tissue
1073
primary cell
659
cell line
391
in vitro differentiated cells
8
stem cell
Organ
547
connective tissue
499
pancreas
488
adipose tissue
361
liver
265
brain
256
heart
214
kidney
133
blood vessel
133
vasculature
122
limb
musculature of body
73
artery
70
bone element
56
eye
43
nerve
25
spleen
20
lung
18
ureter
15
epithelium
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2362
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1753
GRCh38
1629
hg19
Lab
2170
AMP-T2D consortium
85
Katalin Susztak, Upenn
47
KPMP
46
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
6
inconsistent ontology term
3
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
txt
month_released!
April, 2019
March, 2023
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
2459 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
snDrop-seq
tissue
islet of Langerhans
286
71
68
6
1
7
4
3
1
1
4
adipose tissue
382
2
3
3
1
liver
167
145
20
1
2
3
1
1
1
1
kidney
4
75
51
13
6
1
1
1
left cardiac atrium
40
18
1
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