Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
971
total RNA-seq
813
ChIP-seq
196
ATAC-seq
178
DNase-seq
69
single cell RNA-seq
27
WGBS
25
pCHi-C
21
snATAC-seq
16
small RNA-seq
14
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
RNA microarray
Assay category
1056
Transcription
813
DNA binding
399
DNA accessibility
38
DNA methylation
14
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
187
control
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
456
February, 2021
261
August, 2017
242
October, 2019
193
May, 2020
August, 2021
163
June, 2019
120
July, 2018
111
May, 2019
91
February, 2023
82
November, 2017
77
July, 2019
74
April, 2019
59
May, 2022
59
October, 2018
47
September, 2023
40
March, 2020
40
May, 2021
40
November, 2019
35
May, 2024
25
February, 2020
23
October, 2017
19
April, 2020
19
November, 2018
17
December, 2017
15
May, 2023
8
January, 2021
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
December, 2018
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1818
bam
1679
bigWig
977
tsv
845
bed narrowPeak
496
bigBed narrowPeak
298
fastq
238
tagAlign
213
bed broadPeak
192
bed bed3+
176
bigBed broadPeak
txt
25
bed bedMethyl
25
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2346
Homo sapiens
Biosample type
2354
tissue
1015
primary cell
300
in vitro differentiated cells
267
cell line
10
stem cell
Organ
529
connective tissue
480
pancreas
470
adipose tissue
322
liver
265
brain
209
heart
165
kidney
124
blood vessel
124
vasculature
122
limb
81
musculature of body
70
artery
70
bone element
56
eye
43
nerve
20
lung
19
spleen
18
ureter
15
epithelium
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2257
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1702
GRCh38
1665
hg19
Lab
2143
AMP-T2D consortium
47
KPMP
46
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
35
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
14
Katalin Susztak, Upenn
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
7
inconsistent ontology term
3
audit script error
Audit category:
8
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
txt
month_released!
August, 2021
September, 2020
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
2354 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
WGBS
pCHi-C
snATAC-seq
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
RNA microarray
tissue
islet of Langerhans
285
64
68
1
6
4
7
2
1
1
4
adipose tissue
382
2
3
3
1
liver
167
108
20
2
1
3
1
1
1
1
kidney
26
11
13
51
1
1
bone tissue
58
+ See 168 more…
See all biosamples
Download