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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
963
total RNA-seq
604
ChIP-seq
178
DNase-seq
173
ATAC-seq
166
single cell RNA-seq
27
WGBS
25
pCHi-C
25
snATAC-seq
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
Assay category
1145
Transcription
604
DNA binding
380
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
448
February, 2021
211
August, 2017
203
October, 2019
193
May, 2020
172
August, 2021
163
June, 2019
120
July, 2018
February, 2023
77
July, 2019
59
May, 2019
59
May, 2022
55
October, 2018
47
September, 2023
45
December, 2017
43
April, 2019
40
March, 2020
40
May, 2021
40
November, 2017
40
November, 2019
26
November, 2018
25
February, 2020
20
May, 2024
19
April, 2020
15
May, 2023
13
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
3
January, 2019
2
January, 2018
1
August, 2022
Available data
1677
bam
1519
bigWig
1072
tsv
660
bed narrowPeak
357
bigBed narrowPeak
332
fastq
199
bed bed3+
193
bed broadPeak
176
bigBed broadPeak
162
tagAlign
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2213
Homo sapiens
Biosample type
2218
tissue
878
primary cell
636
cell line
322
in vitro differentiated cells
9
stem cell
Organ
526
connective tissue
467
adipose tissue
440
pancreas
336
liver
227
kidney
220
heart
194
brain
88
limb
66
bone element
65
musculature of body
62
blood vessel
62
vasculature
27
nerve
25
eye
24
artery
21
spleen
20
lung
18
ureter
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
epithelium
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2139
AMP
47
KPMP
19
LungMap
13
T1D
Genome assembly (visualization)
1574
GRCh38
1515
hg19
Lab
1967
AMP-T2D consortium
85
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
28
Kyle Gaulton, UCSD
20
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
7
inconsistent ontology term
3
audit script error
Audit category:
22
missing controlled_by
Audit category:
3
inconsistent control read length
files.file_type!
txt
month_released!
February, 2023
organ_slims!
skeleton
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
2218 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
single cell RNA-seq
WGBS
pCHi-C
snATAC-seq
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
snDrop-seq
tissue
islet of Langerhans
281
57
1
57
6
4
5
3
1
1
4
adipose tissue
382
2
2
3
1
liver
167
123
2
20
1
3
1
1
1
1
kidney
17
13
75
51
6
1
1
1
bone tissue
58
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