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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
455
total RNA-seq
254
ATAC-seq
238
ChIP-seq
176
DNase-seq
167
single cell RNA-seq
27
snATAC-seq
24
pCHi-C
21
WGBS
16
Hi-C
14
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
RNA microarray
Assay category
636
Transcription
461
DNA accessibility
238
DNA binding
32
DNA methylation
16
3D chromatin structure
Target of assay
histone modification
595
histone
312
narrow histone mark
283
broad histone mark
163
control
77
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
171
August, 2021
166
May, 2020
162
June, 2019
135
August, 2017
July, 2018
90
February, 2023
73
October, 2019
70
February, 2021
67
July, 2019
59
May, 2022
47
September, 2023
43
December, 2017
40
May, 2021
39
November, 2019
37
March, 2020
26
May, 2019
25
November, 2018
23
February, 2020
21
October, 2018
20
April, 2019
19
April, 2020
14
May, 2023
12
November, 2017
10
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
March, 2019
5
May, 2024
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
1
January, 2019
Available data
886
bam
713
bigWig
561
tsv
453
bed narrowPeak
259
fastq
240
bigBed narrowPeak
187
bed bed3+
176
bed broadPeak
174
bigBed broadPeak
txt
64
xls
51
tagAlign
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1414
Homo sapiens
Biosample type
1416
tissue
801
primary cell
623
cell line
278
in vitro differentiated cells
8
stem cell
Organ
514
connective tissue
adipose tissue
306
pancreas
291
liver
218
heart
217
kidney
81
brain
79
blood vessel
79
vasculature
73
limb
70
bone element
56
musculature of body
54
eye
53
artery
20
lung
19
nerve
19
spleen
18
ureter
15
epithelium
12
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1321
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
828
GRCh38
778
hg19
Lab
1162
AMP-T2D consortium
85
Katalin Susztak, Upenn
47
KPMP
46
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
5
Patrick T. Ellinor, Broad
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
4
inconsistent ontology term
3
audit script error
Audit category:
6
missing controlled_by
files.file_type!
txt
month_released!
July, 2018
organ_slims!
adipose tissue
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
1416 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
RNA microarray
tissue
islet of Langerhans
166
68
20
1
6
7
4
3
1
1
4
liver
167
20
80
2
1
1
3
1
1
1
kidney
75
7
13
51
6
1
1
1
bone tissue
58
heart left ventricle
3
2
11
3
18
1
4
1
1
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