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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
952
total RNA-seq
887
ChIP-seq
221
ATAC-seq
177
DNase-seq
166
single cell RNA-seq
27
snATAC-seq
25
WGBS
24
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
3
RNA microarray
3
snDrop-seq
Assay category
1134
Transcription
887
DNA binding
429
DNA accessibility
36
DNA methylation
16
3D chromatin structure
Target of assay
622
histone modification
621
histone
322
narrow histone mark
299
broad histone mark
177
control
88
transcription factor
28
RNA binding protein
2
chromatin remodeller
Date released
456
February, 2021
284
August, 2017
242
October, 2019
193
May, 2020
172
August, 2021
163
June, 2019
120
July, 2018
115
May, 2019
91
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
May, 2022
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
39
March, 2020
25
February, 2020
22
October, 2017
19
April, 2020
17
November, 2018
15
May, 2023
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1859
bam
1736
bigWig
1075
tsv
932
bed narrowPeak
548
bigBed narrowPeak
329
fastq
238
tagAlign
212
bed broadPeak
203
bed bed3+
175
bigBed broadPeak
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2523
Homo sapiens
Biosample type
2532
tissue
948
primary cell
655
cell line
391
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
488
adipose tissue
477
pancreas
321
liver
313
heart
265
brain
237
kidney
133
blood vessel
133
vasculature
122
limb
80
musculature of body
73
artery
70
bone element
56
eye
43
nerve
spleen
20
lung
18
ureter
15
epithelium
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2435
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1843
GRCh38
1702
hg19
Lab
2305
AMP-T2D consortium
85
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
7
inconsistent ontology term
3
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
txt
month_released!
May, 2022
November, 2020
organ_slims!
spleen
BIOSAMPLE
ASSAY
2532 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
RNA microarray
snDrop-seq
tissue
islet of Langerhans
286
71
50
1
6
7
4
3
1
1
adipose tissue
382
2
3
3
1
liver
147
145
2
1
3
1
1
1
1
kidney
27
75
13
51
6
1
1
1
heart left ventricle
3
35
2
3
18
4
1
1
1
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