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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
970
total RNA-seq
883
ChIP-seq
247
ATAC-seq
169
DNase-seq
167
single cell RNA-seq
27
snATAC-seq
24
pCHi-C
21
WGBS
16
Hi-C
16
small RNA-seq
11
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
2
RNA microarray
Assay category
1153
Transcription
883
DNA binding
446
DNA accessibility
32
DNA methylation
16
3D chromatin structure
Target of assay
622
histone modification
621
histone
322
narrow histone mark
299
broad histone mark
179
control
84
transcription factor
28
RNA binding protein
2
chromatin remodeller
2
nucleotide modification
Date released
456
February, 2021
284
August, 2017
242
October, 2019
193
May, 2020
172
August, 2021
163
June, 2019
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
77
February, 2023
77
July, 2019
74
October, 2018
59
May, 2022
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
39
March, 2020
25
February, 2020
22
October, 2017
19
April, 2020
November, 2018
15
May, 2023
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
2
December, 2019
2
January, 2018
1
August, 2022
Available data
1866
bam
1739
bigWig
1072
tsv
945
bed narrowPeak
535
bigBed narrowPeak
336
fastq
238
tagAlign
204
bed broadPeak
196
bed bed3+
167
bigBed broadPeak
txt
64
xls
19
bed bedMethyl
19
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2554
Homo sapiens
Biosample type
2563
tissue
681
primary cell
521
cell line
367
in vitro differentiated cells
10
stem cell
Organ
546
connective tissue
492
pancreas
487
adipose tissue
354
liver
313
heart
263
brain
237
kidney
133
blood vessel
133
vasculature
122
limb
81
musculature of body
73
artery
70
bone element
56
eye
43
nerve
20
lung
18
ureter
spleen
epithelium
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2466
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1827
GRCh38
1715
hg19
Lab
2274
AMP-T2D consortium
85
Katalin Susztak, Upenn
47
KPMP
46
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
7
inconsistent ontology term
2
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
txt
month_released!
November, 2018
organ_slims!
epithelium
spleen
BIOSAMPLE
ASSAY
2563 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
snDrop-seq
RNA microarray
tissue
islet of Langerhans
286
71
68
1
6
7
4
3
1
4
1
adipose tissue
382
2
3
1
3
liver
167
141
20
1
1
3
1
1
1
kidney
27
75
13
51
6
1
1
1
heart left ventricle
3
35
2
3
18
1
4
1
1
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