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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
972
total RNA-seq
875
ChIP-seq
260
ATAC-seq
178
DNase-seq
167
single cell RNA-seq
27
WGBS
27
snATAC-seq
24
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
Assay category
1155
Transcription
875
DNA binding
469
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
624
histone modification
623
histone
320
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
456
February, 2021
282
August, 2017
238
October, 2019
193
May, 2020
172
August, 2021
163
June, 2019
120
July, 2018
111
May, 2019
91
February, 2023
82
November, 2017
77
July, 2019
76
April, 2019
63
October, 2018
59
May, 2022
47
September, 2023
46
December, 2017
40
May, 2021
40
November, 2019
39
March, 2020
35
May, 2024
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1884
bam
1745
bigWig
1075
tsv
958
bed narrowPeak
541
bigBed narrowPeak
362
fastq
238
tagAlign
213
bed broadPeak
203
bed bed3+
176
bigBed broadPeak
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2578
Homo sapiens
Biosample type
2587
tissue
1078
primary cell
596
cell line
380
in vitro differentiated cells
10
stem cell
Organ
542
connective tissue
491
pancreas
483
adipose tissue
359
liver
303
heart
265
brain
236
kidney
130
blood vessel
130
vasculature
122
limb
81
musculature of body
72
artery
70
bone element
56
eye
43
nerve
25
spleen
20
lung
18
ureter
15
epithelium
12
skeleton
5
gonad
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2490
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1832
GRCh38
1732
hg19
Lab
2303
AMP-T2D consortium
85
Katalin Susztak, Upenn
47
KPMP
46
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
35
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
7
inconsistent ontology term
3
audit script error
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
txt
organ_slims!
ovary
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
2587 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
WGBS
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
snDrop-seq
tissue
islet of Langerhans
286
65
68
1
6
7
4
3
1
1
4
adipose tissue
382
2
3
3
1
liver
167
144
20
2
1
3
1
1
1
1
kidney
26
75
13
51
6
1
1
1
heart left ventricle
3
32
2
3
18
4
1
1
1
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