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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ATAC-seq
27
ChIP-seq
22
DNase-seq
2
single cell RNA-seq
2
total RNA-seq
Assay category
59
DNA accessibility
27
DNA binding
4
Transcription
Target of assay
20
histone
20
histone modification
14
broad histone mark
7
control
6
narrow histone mark
RNA binding protein
1
transcription factor
Date released
35
February, 2023
26
October, 2019
20
June, 2019
4
May, 2019
2
August, 2021
2
February, 2020
1
July, 2019
Available data
79
bed narrowPeak
51
bam
44
bigWig
42
bigBed narrowPeak
22
bed bed3+
22
bed broadPeak
22
bigBed broadPeak
4
tsv
Organism
90
Homo sapiens
Biosample type
90
tissue
66
cell line
2
primary cell
Organ
542
connective tissue
491
pancreas
483
adipose tissue
359
liver
303
heart
265
brain
236
kidney
130
blood vessel
130
vasculature
122
limb
81
musculature of body
72
artery
70
bone element
56
eye
43
nerve
25
spleen
20
lung
18
ureter
15
epithelium
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
90
AMP
Genome assembly (visualization)
79
GRCh38
44
hg19
Lab
90
AMP-T2D consortium
files.file_type!
txt
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
90 results
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ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
total RNA-seq
tissue
coronary artery
36
4
2
1
tibial artery
1
23
2
1
renal pelvis
10
left renal pelvis
4
right renal pelvis
4
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