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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 972total RNA-seq
  • 907ChIP-seq
  • 260ATAC-seq
  • 178DNase-seq
  • 167single cell RNA-seq
  • 27WGBS
  • 27snATAC-seq
  • 25pCHi-C
  • 16Hi-C
  • 16small RNA-seq
  • 11RRBS
  • 4FAIRE-seq
  • 4MeRIP-seq
  • 3RNA microarray
  • 3snDrop-seq
Assay category
  • 1155Transcription
  • 907DNA binding
  • 469DNA accessibility
  • 38DNA methylation
  • 163D chromatin structure
Target of assay
  • 628histone modification
  • 627histone
  • 324narrow histone mark
  • 303broad histone mark
  • 187control
  • 94transcription factor
  • 28RNA binding protein
  • 3other context
  • 3other post-translational modification
  • 2chromatin remodeller
  • 2nucleotide modification
Date released
  • 456February, 2021
  • 284August, 2017
  • 242October, 2019
  • 193May, 2020
  • 172August, 2021
  • 163June, 2019
  • 120July, 2018
  • 115May, 2019
  • 91February, 2023
  • 82November, 2017
  • 80April, 2019
  • 77July, 2019
  • 74October, 2018
  • 59May, 2022
  • 48December, 2017
  • 47September, 2023
  • 40March, 2020
  • 40May, 2021
  • 40May, 2024
  • 40November, 2019
  • 26November, 2018
  • 25February, 2020
  • 23October, 2017
  • 19April, 2020
  • 15May, 2023
  • 8January, 2021
  • 7December, 2018
  • 7January, 2019
  • 6April, 2018
  • 6September, 2017
  • 5March, 2019
  • 4November, 2020
  • 3December, 2019
  • 2January, 2018
  • 1August, 2022
Available data
  • 1907bam
  • 1772bigWig
  • 1076tsv
  • 984bed narrowPeak
  • 561bigBed narrowPeak
  • 377fastq
  • 238tagAlign
  • 213bed broadPeak
  • 205bed bed3+
  • 176bigBed broadPeak
  • txt
  • 64xls
  • 25bed bedMethyl
  • 25bigBed bedMethyl
  • 11hic
  • 10bedpe bed3+
  • 6csv
  • 5bed bed3
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 2611Homo sapiens
Biosample type
  • 2620tissue
  • 1088primary cell
  • 661cell line
  • 391in vitro differentiated cells
  • 10stem cell
Organ
  • 547connective tissue
  • 499pancreas
  • 488adipose tissue
  • 361liver
  • 313heart
  • 265brain
  • 237kidney
  • 133blood vessel
  • 133vasculature
  • 122limb
  • 81musculature of body
  • 73artery
  • 70bone element
  • 56eye
  • 43nerve
  • 25spleen
  • 20lung
  • 18ureter
  • 15epithelium
  • 12skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1pericardium
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 2523AMP
  • 47KPMP
  • 31T1D
  • 19LungMap
Genome assembly (visualization)
  • 1859GRCh38
  • 1754hg19
Lab
  • 2331AMP-T2D consortium
  • 85Katalin Susztak, Upenn
  • 47KPMP
  • 46Kyle Gaulton, UCSD
  • 40Karen Mohlke, UNC
  • 40Patrick T. Ellinor, Broad
  • 19Xin Sun, UCSD
  • 4Bing Ren, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 27inconsistent control
  • 7inconsistent ontology term
  • 3audit script error
Audit category:
  • 26missing controlled_by
Audit category:
  • 6inconsistent control read length
  • 1inconsistent assembly
files.file_type!
  • txt
BIOSAMPLE
ASSAY

2620 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
WGBS
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
snDrop-seq
tissue
islet of Langerhans286716816743114
adipose tissue3822331
liver167145202131111
kidney277513516111
heart left ventricle33523184111
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