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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
724
total RNA-seq
713
ChIP-seq
198
ATAC-seq
174
single cell RNA-seq
171
DNase-seq
87
RNA microarray
24
pCHi-C
23
WGBS
17
snATAC-seq
14
small RNA-seq
12
Hi-C
9
RRBS
3
snDrop-seq
2
FAIRE-seq
Assay category
912
Transcription
713
DNA binding
388
DNA accessibility
32
DNA methylation
12
3D chromatin structure
Target of assay
555
histone modification
554
histone
292
narrow histone mark
262
broad histone mark
158
control
transcription factor
20
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
545
February, 2021
239
October, 2019
227
August, 2021
193
May, 2020
159
June, 2019
121
August, 2017
109
May, 2019
82
November, 2017
77
February, 2023
74
April, 2019
71
July, 2019
47
September, 2023
42
May, 2022
35
May, 2024
31
March, 2020
February, 2020
19
April, 2020
18
October, 2017
18
October, 2018
17
December, 2017
15
May, 2023
12
November, 2018
7
January, 2019
4
December, 2018
3
December, 2019
3
May, 2021
2
January, 2018
1
November, 2019
Available data
1406
bam
1323
bigWig
797
bed narrowPeak
777
tsv
444
bigBed narrowPeak
222
tagAlign
193
bed broadPeak
172
bed bed3+
170
bigBed broadPeak
151
txt
102
fastq
64
xls
19
bed bedMethyl
19
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
2169
Homo sapiens
Biosample type
2171
tissue
732
primary cell
343
in vitro differentiated cells
209
cell line
10
stem cell
Organ
528
connective tissue
pancreas
469
adipose tissue
321
liver
298
heart
298
kidney
253
brain
158
bone element
127
blood vessel
127
vasculature
119
limb
80
musculature of body
70
artery
55
eye
42
nerve
20
lung
19
spleen
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
2104
AMP
47
KPMP
19
LungMap
1
T1D
Genome assembly (visualization)
1397
GRCh38
1271
hg19
Lab
1887
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
35
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
1
Kyle Gaulton, UCSD
Audit category:
90
inconsistent ontology term
8
audit script error
Audit category:
4
missing controlled_by
Audit category:
1
inconsistent control read length
files.file_type!
vcf
month_released!
February, 2020
organ_slims!
pancreas
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
2171 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
WGBS
snATAC-seq
small RNA-seq
Hi-C
RRBS
snDrop-seq
FAIRE-seq
tissue
adipose tissue
382
2
3
1
3
liver
167
108
20
1
2
1
3
1
1
1
kidney
49
26
75
64
13
6
1
1
1
bone element
84
heart left ventricle
3
30
2
18
3
1
4
1
1
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