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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1016
total RNA-seq
252
ChIP-seq
221
ATAC-seq
151
DNase-seq
87
RNA microarray
87
single cell RNA-seq
28
snATAC-seq
22
pCHi-C
19
WGBS
15
small RNA-seq
13
Hi-C
10
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1118
Transcription
404
DNA accessibility
252
DNA binding
29
DNA methylation
13
3D chromatin structure
Target of assay
533
histone modification
histone
286
narrow histone mark
246
broad histone mark
171
control
82
transcription factor
18
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
166
May, 2020
161
August, 2017
137
August, 2021
136
June, 2019
120
July, 2018
71
October, 2019
66
May, 2022
59
February, 2023
57
July, 2019
47
September, 2023
44
October, 2018
43
December, 2017
40
November, 2019
38
May, 2021
31
March, 2020
26
November, 2018
22
February, 2020
19
April, 2020
18
May, 2019
15
May, 2023
12
November, 2017
11
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
April, 2019
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1369
bam
1189
bigWig
965
tsv
387
bed narrowPeak
304
fastq
215
bigBed narrowPeak
166
bed bed3+
157
txt
151
bed broadPeak
149
bigBed broadPeak
64
xls
52
tagAlign
18
bed bedMethyl
18
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1929
Homo sapiens
Biosample type
1932
tissue
839
primary cell
557
cell line
281
in vitro differentiated cells
8
stem cell
Organ
514
connective tissue
456
adipose tissue
432
pancreas
292
liver
279
kidney
heart
158
bone element
81
brain
79
blood vessel
79
vasculature
73
limb
57
musculature of body
54
eye
53
artery
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1837
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1269
GRCh38
1265
hg19
Lab
1620
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
18
missing controlled_by
files.file_type!
vcf
organ_slims!
bone marrow
heart
target.investigated_as!
histone
BIOSAMPLE
ASSAY
1932 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
single cell RNA-seq
snATAC-seq
pCHi-C
WGBS
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
20
68
1
6
7
4
3
1
1
4
adipose tissue
382
1
3
1
3
liver
167
81
20
2
1
1
3
1
1
1
kidney
49
7
75
13
64
6
1
1
1
bone element
84
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