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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
854
total RNA-seq
686
ChIP-seq
231
ATAC-seq
179
single cell RNA-seq
138
DNase-seq
87
RNA microarray
28
snATAC-seq
24
pCHi-C
22
WGBS
13
small RNA-seq
11
Hi-C
9
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1046
Transcription
686
DNA binding
401
DNA accessibility
31
DNA methylation
11
3D chromatin structure
Target of assay
509
histone
509
histone modification
265
narrow histone mark
244
broad histone mark
124
control
55
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
538
February, 2021
230
August, 2017
229
August, 2021
167
October, 2019
131
June, 2019
120
July, 2018
108
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
63
July, 2019
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
37
March, 2020
26
May, 2022
23
October, 2017
21
February, 2020
19
April, 2020
19
November, 2018
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1505
bam
1416
bigWig
915
tsv
779
bed narrowPeak
428
bigBed narrowPeak
294
fastq
174
bed broadPeak
168
tagAlign
163
bed bed3+
157
txt
137
bigBed broadPeak
64
xls
22
bed bedMethyl
22
bigBed bedMethyl
10
hic
9
bedpe bed3+
5
bed bed3
5
csv
1
bedpe
1
tagAlign bed3+
Organism
2284
Homo sapiens
Biosample type
2293
tissue
1073
primary cell
379
in vitro differentiated cells
261
cell line
10
stem cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2196
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1525
GRCh38
1390
hg19
Lab
1981
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
files.file_type!
vcf
organ_slims!
limb
liver
pericardium
BIOSAMPLE
ASSAY
2293 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
70
68
6
1
7
4
3
1
1
4
adipose tissue
382
2
3
1
3
kidney
49
27
75
64
13
6
1
1
1
bone element
84
heart left ventricle
3
35
2
18
3
1
4
1
1
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