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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
412
total RNA-seq
167
ChIP-seq
93
single cell RNA-seq
45
ATAC-seq
29
DNase-seq
14
WGBS
4
pCHi-C
3
Hi-C
3
small RNA-seq
1
RNA microarray
1
RRBS
Assay category
508
Transcription
167
DNA binding
74
DNA accessibility
15
DNA methylation
3
3D chromatin structure
Target of assay
127
histone
127
histone modification
77
broad histone mark
50
narrow histone mark
40
control
transcription factor
15
RNA binding protein
Date released
386
February, 2021
93
August, 2021
52
April, 2019
45
August, 2017
37
February, 2023
35
May, 2024
30
July, 2019
28
June, 2019
19
May, 2019
18
October, 2018
9
October, 2019
8
March, 2020
5
February, 2020
2
May, 2021
1
January, 2018
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
551
bigWig
548
bam
510
tsv
169
bed narrowPeak
86
bigBed narrowPeak
30
bed broadPeak
29
bed bed3+
29
bigBed broadPeak
26
fastq
9
bed bedMethyl
9
bigBed bedMethyl
8
tagAlign
3
bedpe bed3+
3
hic
Organism
771
Homo sapiens
Biosample type
772
tissue
62
cell line
14
primary cell
2
in vitro differentiated cells
Organ
530
connective tissue
488
pancreas
471
adipose tissue
322
liver
301
heart
298
kidney
265
brain
158
bone element
130
blood vessel
130
vasculature
122
limb
82
musculature of body
72
artery
56
eye
43
nerve
20
lung
19
spleen
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
772
AMP
Genome assembly (visualization)
584
GRCh38
513
hg19
Lab
737
AMP-T2D consortium
35
Patrick T. Ellinor, Broad
Audit category:
1
inconsistent ontology term
files.file_type!
vcf
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
772 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RNA microarray
RRBS
tissue
adipose tissue
382
2
3
3
1
heart left ventricle
3
30
18
2
3
4
1
1
1
left cardiac atrium
35
18
1
coronary artery
1
4
36
2
heart
4
14
1
18
1
1
1
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