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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
768
ChIP-seq
627
total RNA-seq
182
ATAC-seq
180
single cell RNA-seq
86
RNA microarray
28
snATAC-seq
24
pCHi-C
20
WGBS
14
small RNA-seq
12
Hi-C
11
RRBS
10
DNase-seq
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
821
Transcription
768
DNA binding
224
DNA accessibility
31
DNA methylation
12
3D chromatin structure
Target of assay
547
histone modification
546
histone
297
narrow histone mark
249
broad histone mark
146
control
77
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
227
August, 2017
193
May, 2020
172
October, 2019
164
August, 2021
153
February, 2021
June, 2019
120
July, 2018
108
May, 2019
94
February, 2023
82
November, 2017
80
April, 2019
66
May, 2022
62
July, 2019
51
October, 2018
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
39
March, 2020
39
November, 2019
25
November, 2018
22
October, 2017
20
February, 2020
19
April, 2020
14
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1223
bam
1128
bigWig
749
bed narrowPeak
670
tsv
337
bigBed narrowPeak
334
fastq
230
tagAlign
157
txt
xls
44
bed broadPeak
33
bed bed3+
22
bed bedMethyl
22
bigBed bedMethyl
11
hic
10
bedpe bed3+
8
bigBed broadPeak
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1965
Homo sapiens
Biosample type
1973
tissue
1031
primary cell
662
cell line
393
in vitro differentiated cells
10
stem cell
Organ
546
connective tissue
501
pancreas
adipose tissue
361
liver
286
heart
240
brain
167
kidney
158
bone element
130
blood vessel
130
vasculature
limb
71
artery
53
eye
50
musculature of body
43
nerve
25
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1876
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1147
GRCh38
1121
hg19
Lab
1685
AMP-T2D consortium
78
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
14
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
xls
month_released!
June, 2019
organ_slims!
adipose tissue
limb
BIOSAMPLE
ASSAY
1973 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
small RNA-seq
Hi-C
RRBS
DNase-seq
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
70
292
68
6
7
4
3
1
1
1
4
liver
145
167
20
1
1
3
1
1
1
2
kidney
27
49
11
64
6
1
1
1
bone element
84
heart left ventricle
35
3
2
18
1
4
1
1
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