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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
805
ChIP-seq
629
total RNA-seq
189
ATAC-seq
179
single cell RNA-seq
144
DNase-seq
86
RNA microarray
27
snATAC-seq
23
pCHi-C
20
WGBS
13
small RNA-seq
10
Hi-C
7
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
821
Transcription
805
DNA binding
364
DNA accessibility
27
DNA methylation
10
3D chromatin structure
Target of assay
571
histone modification
570
histone
303
narrow histone mark
267
broad histone mark
159
control
77
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
241
October, 2019
201
August, 2017
193
May, 2020
164
August, 2021
159
February, 2021
130
June, 2019
120
July, 2018
108
May, 2019
94
February, 2023
82
November, 2017
80
April, 2019
64
May, 2022
60
July, 2019
51
October, 2018
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
39
November, 2019
34
March, 2020
25
November, 2018
22
October, 2017
21
February, 2020
19
April, 2020
14
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
Available data
1423
bam
1292
bigWig
920
bed narrowPeak
670
tsv
513
bigBed narrowPeak
332
fastq
215
tagAlign
166
bed bed3+
165
bed broadPeak
156
txt
142
bigBed broadPeak
xls
20
bed bedMethyl
20
bigBed bedMethyl
9
hic
8
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2135
Homo sapiens
Biosample type
2143
tissue
1050
primary cell
662
cell line
393
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
505
pancreas
adipose tissue
361
liver
313
heart
265
brain
235
kidney
158
bone element
133
blood vessel
133
vasculature
122
limb
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2046
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1331
GRCh38
1270
hg19
Lab
1855
AMP-T2D consortium
78
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
8
audit script error
Audit category:
14
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
xls
organ_slims!
adipose tissue
musculature of body
vein
BIOSAMPLE
ASSAY
2143 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
71
292
68
6
1
7
4
3
1
1
4
liver
145
167
20
1
2
1
3
1
1
1
kidney
27
49
11
64
13
6
1
1
1
bone element
84
heart left ventricle
35
3
2
18
3
1
4
1
1
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