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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
962
total RNA-seq
819
ChIP-seq
202
ATAC-seq
174
single cell RNA-seq
173
DNase-seq
28
snATAC-seq
25
WGBS
24
pCHi-C
16
small RNA-seq
15
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
Assay category
1152
Transcription
819
DNA binding
407
DNA accessibility
36
DNA methylation
15
3D chromatin structure
Target of assay
562
histone modification
561
histone
304
narrow histone mark
257
broad histone mark
168
control
91
transcription factor
25
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
395
February, 2021
284
August, 2017
223
August, 2021
216
October, 2019
193
May, 2020
160
June, 2019
120
July, 2018
82
November, 2017
80
April, 2019
74
October, 2018
70
July, 2019
66
May, 2022
65
May, 2019
52
February, 2023
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
37
March, 2020
26
November, 2018
October, 2017
22
February, 2020
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1739
bam
1630
bigWig
1004
tsv
864
bed narrowPeak
493
bigBed narrowPeak
360
fastq
224
tagAlign
204
bed broadPeak
200
bed bed3+
171
bigBed broadPeak
69
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
1
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2454
Homo sapiens
Biosample type
2463
tissue
903
primary cell
596
cell line
394
in vitro differentiated cells
10
stem cell
Organ
546
connective tissue
500
pancreas
487
adipose tissue
361
liver
313
heart
299
kidney
249
brain
bone element
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
24
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2366
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1674
GRCh38
1602
hg19
Lab
2112
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
27
inconsistent control
9
audit script error
7
inconsistent ontology term
Audit category:
22
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
zippedFastqFolder
month_released!
October, 2017
organ_slims!
blood vessel
bone element
BIOSAMPLE
ASSAY
2463 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
snDrop-seq
tissue
islet of Langerhans
292
71
67
6
1
7
4
3
1
1
4
adipose tissue
382
2
3
3
1
liver
167
145
20
1
2
3
1
1
1
1
kidney
49
27
75
64
13
6
1
1
1
heart left ventricle
3
35
2
18
3
4
1
1
1
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