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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
799
total RNA-seq
737
ChIP-seq
219
ATAC-seq
179
single cell RNA-seq
174
DNase-seq
28
snATAC-seq
24
pCHi-C
23
WGBS
15
Hi-C
13
small RNA-seq
10
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
Assay category
991
Transcription
737
DNA binding
425
DNA accessibility
33
DNA methylation
15
3D chromatin structure
Target of assay
546
histone
546
histone modification
278
narrow histone mark
268
broad histone mark
138
control
55
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
394
February, 2021
236
October, 2019
230
August, 2017
229
August, 2021
163
June, 2019
120
July, 2018
115
May, 2019
87
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
69
July, 2019
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
37
March, 2020
26
May, 2022
24
February, 2020
October, 2017
19
April, 2020
19
November, 2018
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1538
bam
1435
bigWig
864
tsv
851
bed narrowPeak
506
bigBed narrowPeak
277
fastq
206
bed broadPeak
199
bed bed3+
173
bigBed broadPeak
154
tagAlign
69
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
5
csv
1
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2226
Homo sapiens
Biosample type
2235
tissue
920
primary cell
379
in vitro differentiated cells
261
cell line
10
stem cell
Organ
546
connective tissue
500
pancreas
487
adipose tissue
liver
313
heart
299
kidney
249
brain
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
24
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2138
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1541
GRCh38
1404
hg19
Lab
1924
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
9
audit script error
7
inconsistent ontology term
Audit category:
22
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
files.file_type!
zippedFastqFolder
month_released!
October, 2017
organ_slims!
bone element
liver
BIOSAMPLE
ASSAY
2235 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
snDrop-seq
tissue
islet of Langerhans
292
71
67
6
1
7
4
3
1
1
4
adipose tissue
382
2
3
1
3
kidney
49
27
75
64
13
6
1
1
1
heart left ventricle
3
35
2
18
3
1
4
1
1
left cardiac atrium
40
18
1
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