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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
172
total RNA-seq
155
ChIP-seq
33
ATAC-seq
4
DNase-seq
4
WGBS
3
small RNA-seq
1
Hi-C
1
RNA microarray
1
RRBS
1
pCHi-C
1
single cell RNA-seq
Assay category
176
Transcription
155
DNA binding
37
DNA accessibility
5
DNA methylation
1
3D chromatin structure
Target of assay
70
histone modification
69
histone
46
control
44
narrow histone mark
39
transcription factor
25
broad histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
193
May, 2020
54
August, 2017
48
December, 2017
40
May, 2022
14
February, 2023
8
July, 2019
7
November, 2018
6
October, 2019
3
March, 2020
1
December, 2019
1
February, 2020
1
February, 2021
Available data
288
bam
265
bigWig
157
tsv
125
bed narrowPeak
83
fastq
70
tagAlign
49
bigBed narrowPeak
6
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hic
Organism
376
Homo sapiens
Biosample type
480
cell line
376
tissue
327
primary cell
24
in vitro differentiated cells
Organ
546
connective tissue
500
pancreas
487
adipose tissue
361
liver
313
heart
299
kidney
249
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
24
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
376
AMP
Genome assembly (visualization)
280
hg19
238
GRCh38
Lab
336
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
audit script error
Audit category:
1
inconsistent control read length
files.file_type!
zippedFastqFolder
month_released!
October, 2017
BIOSAMPLE
ASSAY
376 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
Hi-C
RNA microarray
RRBS
pCHi-C
single cell RNA-seq
tissue
liver
167
145
20
2
3
1
1
1
1
1
right lobe of liver
3
10
1
2
1
2
pigmented layer of retina
2
12
renal glomerulus
1
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