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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
68
DNase-seq
64
single cell RNA-seq
50
total RNA-seq
7
ChIP-seq
6
snATAC-seq
3
snDrop-seq
2
RNA microarray
1
FAIRE-seq
1
Hi-C
1
RRBS
1
small RNA-seq
Assay category
150
DNA accessibility
115
Transcription
7
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
20
histone
histone modification
10
broad histone mark
10
narrow histone mark
6
control
1
RNA binding protein
1
transcription factor
Date released
128
August, 2021
68
June, 2019
47
September, 2023
14
May, 2023
8
February, 2021
5
April, 2019
4
July, 2019
3
December, 2019
2
October, 2019
Available data
133
bed narrowPeak
78
bam
71
bigWig
69
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
64
xls
62
txt
12
tsv
5
csv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
279
Homo sapiens
Biosample type
279
tissue
26
primary cell
19
cell line
Organ
514
connective tissue
adipose tissue
432
pancreas
291
liver
279
kidney
218
heart
158
bone element
81
brain
79
blood vessel
79
vasculature
73
limb
57
musculature of body
54
eye
53
artery
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
232
AMP
47
KPMP
Genome assembly (visualization)
145
GRCh38
72
hg19
Lab
142
Katalin Susztak, Upenn
90
AMP-T2D consortium
47
KPMP
Audit category:
7
audit script error
files.file_type!
zippedFastqFolder
organ_slims!
adipose tissue
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
279 results
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ATAC-seq
DNase-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
snDrop-seq
RNA microarray
FAIRE-seq
Hi-C
RRBS
small RNA-seq
tissue
kidney
75
13
64
49
7
6
1
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
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