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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
804
total RNA-seq
503
ChIP-seq
36
ATAC-seq
16
small RNA-seq
9
WGBS
2
FAIRE-seq
Assay category
820
Transcription
503
DNA binding
38
DNA accessibility
9
DNA methylation
Target of assay
393
histone
393
histone modification
215
narrow histone mark
178
broad histone mark
100
control
10
transcription factor
8
RNA binding protein
Date released
452
February, 2021
193
May, 2020
182
October, 2019
115
May, 2019
114
July, 2018
79
April, 2019
69
November, 2017
64
July, 2019
39
November, 2019
38
May, 2021
16
October, 2018
9
March, 2020
Available data
1889
bam
1754
bigWig
1076
tsv
966
bed narrowPeak
543
bigBed narrowPeak
fastq
238
tagAlign
195
bed broadPeak
bed bed3+
158
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1370
Homo sapiens
Biosample type
1370
tissue
341
primary cell
156
cell line
155
in vitro differentiated cells
Organ
455
connective tissue
397
adipose tissue
213
pancreas
207
liver
190
brain
105
heart
82
blood vessel
82
vasculature
78
limb
66
bone element
40
nerve
30
artery
30
kidney
12
musculature of body
8
skeleton
1
pituitary gland
Project
1368
AMP
2
T1D
Genome assembly (visualization)
1257
GRCh38
1207
hg19
Lab
1370
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
files.file_type!
bed bed3+
fastq
organ_slims!
ureter
BIOSAMPLE
ASSAY
1370 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
WGBS
FAIRE-seq
tissue
adipose tissue
381
liver
147
55
1
islet of Langerhans
169
2
19
bone tissue
58
heart left ventricle
3
34
2
2
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