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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
894
total RNA-seq
705
ChIP-seq
63
ATAC-seq
17
WGBS
16
small RNA-seq
6
single cell RNA-seq
4
FAIRE-seq
1
DNase-seq
Assay category
916
Transcription
705
DNA binding
68
DNA accessibility
17
DNA methylation
Target of assay
450
histone modification
449
histone
235
narrow histone mark
214
broad histone mark
166
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
193
May, 2020
182
October, 2019
163
August, 2017
116
July, 2018
115
May, 2019
79
April, 2019
74
October, 2018
64
July, 2019
64
November, 2017
48
December, 2017
39
November, 2019
38
May, 2021
24
May, 2022
17
November, 2018
12
October, 2017
March, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
Available data
1891
bam
1755
bigWig
1048
tsv
976
bed narrowPeak
555
bigBed narrowPeak
370
fastq
231
tagAlign
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
6
csv
5
bed bed3
4
hic
3
bedpe bed3+
1
bedpe
1
tagAlign bed3+
Organism
1706
Homo sapiens
Biosample type
1706
tissue
560
primary cell
518
cell line
288
in vitro differentiated cells
3
stem cell
Organ
496
connective tissue
438
adipose tissue
412
pancreas
284
liver
191
brain
103
heart
81
blood vessel
81
vasculature
78
limb
66
bone element
40
nerve
30
artery
30
kidney
23
spleen
10
musculature of body
8
skeleton
1
pituitary gland
Project
1706
AMP
Genome assembly (visualization)
1504
GRCh38
1465
hg19
Lab
1682
AMP-T2D consortium
24
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
23
missing controlled_by
Audit category:
6
inconsistent control read length
files.file_type!
bed broadPeak
month_released!
March, 2020
BIOSAMPLE
ASSAY
1706 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
single cell RNA-seq
FAIRE-seq
DNase-seq
tissue
adipose tissue
381
2
2
islet of Langerhans
266
28
37
6
1
1
liver
146
122
1
bone tissue
58
body of pancreas
2
35
4
2
2
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