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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
169
ChIP-seq
47
ATAC-seq
6
total RNA-seq
1
WGBS
Assay category
169
DNA binding
47
DNA accessibility
6
Transcription
1
DNA methylation
Target of assay
167
control
1
RNA binding protein
1
broad histone mark
1
histone
1
histone modification
1
transcription factor
Date released
29
October, 2018
27
October, 2019
24
May, 2022
23
May, 2020
22
May, 2019
20
November, 2019
15
April, 2019
13
November, 2017
12
August, 2017
12
December, 2017
8
February, 2021
6
September, 2017
4
December, 2018
3
November, 2018
2
October, 2017
1
January, 2019
1
July, 2019
1
March, 2019
Available data
1904
bam
bigWig
1071
tsv
954
bed narrowPeak
558
bigBed narrowPeak
377
fastq
238
tagAlign
210
bed broadPeak
202
bed bed3+
173
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
bedpe
1
tagAlign bed3+
Organism
222
Homo sapiens
Biosample type
223
tissue
78
cell line
48
in vitro differentiated cells
44
primary cell
1
stem cell
Organ
65
pancreas
43
liver
25
brain
23
limb
20
adipose tissue
20
connective tissue
17
blood vessel
17
vasculature
16
heart
11
nerve
8
bone element
8
skeleton
8
spleen
7
artery
7
kidney
1
musculature of body
Project
223
AMP
Genome assembly (visualization)
49
hg19
32
GRCh38
Lab
198
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
1
inconsistent ontology term
files.file_type!
bedpe
bigWig
organ_slims!
eye
BIOSAMPLE
ASSAY
223 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
WGBS
tissue
islet of Langerhans
7
38
6
liver
40
tibial nerve
11
subcutaneous adipose tissue
10
body of pancreas
9
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