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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ChIP-seq
25
DNase-seq
12
total RNA-seq
6
WGBS
3
ATAC-seq
1
small RNA-seq
Assay category
77
DNA binding
28
DNA accessibility
13
Transcription
6
DNA methylation
Target of assay
57
histone
57
histone modification
37
broad histone mark
20
narrow histone mark
14
control
6
transcription factor
4
RNA binding protein
Date released
56
April, 2019
25
June, 2019
16
July, 2019
16
May, 2019
7
October, 2019
2
March, 2020
2
May, 2021
Available data
151
bigWig
132
bed narrowPeak
124
bam
110
tsv
83
bigBed narrowPeak
25
bed bed3+
25
bed broadPeak
25
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
124
Homo sapiens
Biosample type
124
tissue
10
primary cell
1
in vitro differentiated cells
Organ
498
connective tissue
440
adipose tissue
429
pancreas
288
liver
226
brain
132
heart
114
limb
98
kidney
87
blood vessel
87
vasculature
66
bone element
44
musculature of body
42
nerve
artery
24
spleen
18
ureter
8
skeleton
3
eye
1
pituitary gland
Project
124
AMP
Genome assembly (visualization)
110
GRCh38
102
hg19
Lab
124
AMP-T2D consortium
files.file_type!
tar
organ_slims!
artery
BIOSAMPLE
ASSAY
124 results
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ChIP-seq
DNase-seq
total RNA-seq
WGBS
ATAC-seq
small RNA-seq
tissue
heart left ventricle
34
3
3
2
2
heart
14
18
4
1
1
heart right ventricle
13
1
1
2
right atrium auricular region
10
2
2
1
right cardiac atrium
6
1
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