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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
901
total RNA-seq
756
ChIP-seq
211
ATAC-seq
17
WGBS
16
small RNA-seq
6
single cell RNA-seq
4
FAIRE-seq
1
DNase-seq
Assay category
923
Transcription
756
DNA binding
216
DNA accessibility
17
DNA methylation
Target of assay
511
histone modification
510
histone
262
narrow histone mark
248
broad histone mark
164
control
81
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
193
May, 2020
182
October, 2019
164
August, 2017
116
July, 2018
115
May, 2019
80
April, 2019
74
October, 2018
70
November, 2017
64
August, 2021
64
July, 2019
63
February, 2023
48
December, 2017
44
May, 2022
40
May, 2024
39
November, 2019
38
May, 2021
17
November, 2018
15
October, 2017
9
March, 2020
7
December, 2018
7
January, 2019
6
April, 2018
4
September, 2017
1
March, 2019
Available data
1907
bam
1772
bigWig
1076
tsv
984
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1905
Homo sapiens
Biosample type
1912
tissue
608
primary cell
595
cell line
276
in vitro differentiated cells
Organ
494
connective tissue
436
adipose tissue
408
pancreas
302
liver
200
brain
181
heart
117
blood vessel
117
vasculature
94
kidney
78
limb
66
bone element
65
artery
40
nerve
27
eye
25
musculature of body
23
spleen
12
epithelium
8
skeleton
1
pituitary gland
Project
1910
AMP
2
T1D
Genome assembly (visualization)
1638
GRCh38
1530
hg19
Lab
1763
AMP-T2D consortium
64
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
24
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
1
Mark McCarthy, Oxford
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
11
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
1912 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
single cell RNA-seq
FAIRE-seq
DNase-seq
tissue
adipose tissue
381
2
1
2
islet of Langerhans
266
15
38
6
1
1
liver
147
119
20
1
kidney
27
64
1
bone tissue
58
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