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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
752
total RNA-seq
652
ChIP-seq
174
DNase-seq
69
ATAC-seq
17
WGBS
13
small RNA-seq
11
single cell RNA-seq
4
FAIRE-seq
Assay category
776
Transcription
652
DNA binding
247
DNA accessibility
17
DNA methylation
Target of assay
473
histone
473
histone modification
241
broad histone mark
232
narrow histone mark
124
control
55
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
Date released
457
February, 2021
181
October, 2019
164
August, 2017
163
June, 2019
116
July, 2018
115
May, 2019
80
April, 2019
74
October, 2018
70
November, 2017
57
July, 2019
40
May, 2024
39
November, 2019
38
May, 2021
24
May, 2022
19
November, 2018
16
October, 2017
10
March, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
2
January, 2018
1
March, 2019
Available data
1619
bam
1507
bigWig
922
tsv
871
bed narrowPeak
512
bigBed narrowPeak
294
fastq
210
bed broadPeak
199
bed bed3+
173
bigBed broadPeak
168
tagAlign
157
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
5
bed bed3
5
csv
1
bedpe
1
tagAlign bed3+
Organism
1685
Homo sapiens
Biosample type
1692
tissue
647
primary cell
292
in vitro differentiated cells
220
cell line
4
stem cell
Organ
501
connective tissue
443
adipose tissue
438
pancreas
liver
227
brain
173
heart
114
limb
103
kidney
87
blood vessel
87
vasculature
66
bone element
58
musculature of body
42
nerve
34
artery
24
spleen
18
ureter
8
skeleton
3
eye
1
pituitary gland
Project
1690
AMP
2
T1D
Genome assembly (visualization)
1506
GRCh38
1430
hg19
Lab
1626
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
5
audit script error
4
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
organ_slims!
liver
BIOSAMPLE
ASSAY
1692 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
single cell RNA-seq
FAIRE-seq
tissue
adipose tissue
381
2
2
2
islet of Langerhans
266
36
1
41
6
1
bone tissue
58
body of pancreas
2
35
4
4
2
2
kidney
27
13
5
1
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