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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
685
ChIP-seq
507
total RNA-seq
175
DNase-seq
61
ATAC-seq
15
WGBS
14
small RNA-seq
10
Hi-C
6
single cell RNA-seq
4
FAIRE-seq
Assay category
685
DNA binding
527
Transcription
240
DNA accessibility
15
DNA methylation
10
3D chromatin structure
Target of assay
465
histone modification
464
histone
242
narrow histone mark
222
broad histone mark
148
control
72
transcription factor
18
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
193
May, 2020
187
October, 2019
162
June, 2019
153
August, 2017
116
July, 2018
115
May, 2019
79
April, 2019
69
November, 2017
66
February, 2021
54
July, 2019
51
October, 2018
48
December, 2017
39
November, 2019
38
May, 2021
25
November, 2018
24
May, 2022
16
March, 2020
14
October, 2017
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
2
March, 2019
Available data
1467
bam
1349
bigWig
907
bed narrowPeak
677
tsv
551
bigBed narrowPeak
334
fastq
230
tagAlign
210
bed broadPeak
199
bed bed3+
174
bigBed broadPeak
100
txt
23
bed bedMethyl
23
bigBed bedMethyl
10
bedpe bed3+
10
hic
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1470
Homo sapiens
Biosample type
1477
tissue
613
primary cell
584
cell line
295
in vitro differentiated cells
3
stem cell
Organ
498
connective tissue
adipose tissue
432
pancreas
289
liver
226
brain
135
heart
114
limb
98
kidney
88
blood vessel
88
vasculature
66
bone element
46
musculature of body
42
nerve
34
artery
24
spleen
18
ureter
8
skeleton
3
eye
1
pituitary gland
Project
1475
AMP
2
T1D
Genome assembly (visualization)
1282
GRCh38
1239
hg19
Lab
1451
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
13
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
lab.title!
Katalin Susztak, Upenn
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
1477 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
islet of Langerhans
30
266
1
38
2
6
1
liver
122
147
2
1
1
bone tissue
58
body of pancreas
35
2
4
4
2
2
heart left ventricle
34
3
3
2
2
1
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