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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
ChIP-seq
89
total RNA-seq
2
ATAC-seq
2
WGBS
1
DNase-seq
1
FAIRE-seq
Assay category
127
DNA binding
89
Transcription
4
DNA accessibility
2
DNA methylation
Target of assay
85
histone modification
84
histone
48
broad histone mark
36
narrow histone mark
23
transcription factor
19
control
2
RNA binding protein
Date released
452
February, 2021
222
August, 2017
193
May, 2020
186
October, 2019
163
June, 2019
116
July, 2018
115
May, 2019
80
November, 2017
79
April, 2019
74
October, 2018
64
July, 2019
48
December, 2017
39
November, 2019
38
May, 2021
26
November, 2018
24
May, 2022
22
October, 2017
9
March, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
1
March, 2019
Available data
178
bigWig
175
fastq
170
bam
89
tsv
66
bed narrowPeak
59
tagAlign
26
bed bed3+
26
bed broadPeak
22
bigBed narrowPeak
5
bed bedMethyl
5
bigBed bedMethyl
Organism
215
Homo sapiens
Biosample type
222
tissue
68
in vitro differentiated cells
58
primary cell
Organ
136
pancreas
46
liver
25
adipose tissue
25
connective tissue
15
musculature of body
Project
222
AMP
Genome assembly (visualization)
177
hg19
158
GRCh38
Lab
222
AMP-T2D consortium
Audit category:
22
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
organ_slims!
adrenal gland
BIOSAMPLE
ASSAY
222 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
31
89
1
1
liver
45
skeletal muscle tissue
15
pancreas
14
white adipose tissue
12
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