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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
901
total RNA-seq
648
ChIP-seq
177
DNase-seq
64
ATAC-seq
17
WGBS
16
small RNA-seq
6
single cell RNA-seq
4
FAIRE-seq
Assay category
923
Transcription
648
DNA binding
245
DNA accessibility
17
DNA methylation
Target of assay
436
histone modification
435
histone
232
narrow histone mark
203
broad histone mark
138
control
74
transcription factor
12
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
193
May, 2020
186
October, 2019
170
August, 2017
163
June, 2019
116
July, 2018
115
May, 2019
79
April, 2019
October, 2018
69
November, 2017
64
July, 2019
48
December, 2017
39
November, 2019
38
May, 2021
26
November, 2018
24
May, 2022
15
October, 2017
9
March, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
1
March, 2019
Available data
1833
bam
1727
bigWig
1076
tsv
939
bed narrowPeak
516
bigBed narrowPeak
319
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1826
Homo sapiens
Biosample type
1833
tissue
607
primary cell
582
cell line
291
in vitro differentiated cells
3
stem cell
Organ
475
connective tissue
417
adipose tissue
378
pancreas
288
liver
226
brain
132
heart
114
limb
98
kidney
87
blood vessel
87
vasculature
66
bone element
44
musculature of body
42
nerve
34
artery
24
spleen
18
ureter
8
skeleton
3
eye
1
pituitary gland
Project
1831
AMP
2
T1D
Genome assembly (visualization)
1658
GRCh38
1603
hg19
Lab
1808
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
month_released!
April, 2020
October, 2018
BIOSAMPLE
ASSAY
1833 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
single cell RNA-seq
FAIRE-seq
tissue
adipose tissue
381
2
2
islet of Langerhans
266
30
1
38
6
1
liver
147
122
2
1
bone tissue
58
heart left ventricle
3
34
3
2
2
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