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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
812
total RNA-seq
580
ChIP-seq
176
DNase-seq
62
ATAC-seq
16
small RNA-seq
15
WGBS
6
single cell RNA-seq
3
FAIRE-seq
Assay category
834
Transcription
580
DNA binding
241
DNA accessibility
15
DNA methylation
Target of assay
425
histone
425
histone modification
224
narrow histone mark
201
broad histone mark
155
control
transcription factor
21
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
193
May, 2020
185
October, 2019
163
June, 2019
August, 2017
116
July, 2018
111
May, 2019
73
April, 2019
69
November, 2017
64
July, 2019
59
October, 2018
39
November, 2019
38
May, 2021
24
May, 2022
19
November, 2018
17
December, 2017
15
October, 2017
9
March, 2020
7
January, 2019
6
April, 2018
6
September, 2017
4
December, 2018
1
March, 2019
Available data
1670
bam
1523
bigWig
987
tsv
847
bed narrowPeak
474
bigBed narrowPeak
187
bed broadPeak
179
bed bed3+
178
tagAlign
176
bigBed broadPeak
157
txt
146
fastq
64
xls
20
bed bedMethyl
20
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1670
Homo sapiens
Biosample type
1670
tissue
543
primary cell
233
cell line
222
in vitro differentiated cells
3
stem cell
Organ
476
connective tissue
418
adipose tissue
292
pancreas
227
liver
226
brain
125
heart
114
limb
97
kidney
84
blood vessel
84
vasculature
66
bone element
44
musculature of body
42
nerve
33
artery
18
spleen
18
ureter
8
skeleton
3
eye
pituitary gland
Project
1668
AMP
2
T1D
Genome assembly (visualization)
1479
GRCh38
1425
hg19
Lab
1645
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
4
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
1
inconsistent control read length
month_released!
August, 2017
organ_slims!
pituitary gland
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
1670 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
single cell RNA-seq
FAIRE-seq
tissue
adipose tissue
381
islet of Langerhans
177
8
38
6
liver
147
64
2
1
bone tissue
58
tibial nerve
4
35
2
1
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