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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
457
total RNA-seq
255
ChIP-seq
177
DNase-seq
49
ATAC-seq
17
WGBS
16
small RNA-seq
6
single cell RNA-seq
4
FAIRE-seq
Assay category
479
Transcription
255
DNA binding
230
DNA accessibility
17
DNA methylation
Target of assay
460
histone modification
histone
242
narrow histone mark
217
broad histone mark
165
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
February, 2021
166
May, 2020
163
June, 2019
131
August, 2017
116
July, 2018
64
July, 2019
44
October, 2018
43
December, 2017
41
October, 2019
39
November, 2019
38
May, 2021
26
May, 2019
26
November, 2018
24
May, 2022
20
April, 2019
12
November, 2017
October, 2017
7
December, 2018
7
March, 2020
6
April, 2018
6
September, 2017
1
January, 2019
1
March, 2019
Available data
981
bam
799
bigWig
624
tsv
451
bed narrowPeak
294
fastq
249
bigBed narrowPeak
193
bed bed3+
177
bed broadPeak
176
bigBed broadPeak
68
txt
64
xls
50
tagAlign
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
Organism
980
Homo sapiens
Biosample type
981
tissue
452
cell line
403
primary cell
190
in vitro differentiated cells
1
stem cell
Organ
366
pancreas
239
liver
78
kidney
73
heart
60
brain
60
limb
52
adipose tissue
52
connective tissue
38
musculature of body
33
blood vessel
33
vasculature
18
nerve
18
ureter
17
spleen
14
artery
3
eye
Project
981
AMP
Genome assembly (visualization)
788
GRCh38
777
hg19
Lab
956
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
18
missing controlled_by
month_released!
February, 2021
October, 2017
target.investigated_as!
histone
BIOSAMPLE
ASSAY
981 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
single cell RNA-seq
FAIRE-seq
tissue
islet of Langerhans
266
14
1
38
6
1
liver
147
78
2
1
body of pancreas
2
18
4
2
2
heart
4
2
18
1
1
heart left ventricle
3
11
3
2
2
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