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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
859
total RNA-seq
498
ChIP-seq
172
DNase-seq
61
ATAC-seq
16
small RNA-seq
15
WGBS
6
single cell RNA-seq
4
FAIRE-seq
Assay category
881
Transcription
498
DNA binding
237
DNA accessibility
15
DNA methylation
Target of assay
412
histone modification
411
histone
225
narrow histone mark
186
broad histone mark
control
86
transcription factor
20
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
170
May, 2020
160
June, 2019
158
August, 2017
138
October, 2019
116
July, 2018
65
April, 2019
57
July, 2019
57
November, 2017
54
May, 2019
45
October, 2018
39
November, 2019
May, 2021
36
December, 2017
24
May, 2022
23
November, 2018
13
October, 2017
8
March, 2020
6
April, 2018
6
January, 2019
3
December, 2018
1
March, 2019
Available data
1664
bigWig
1631
bam
1024
tsv
884
bed narrowPeak
499
bigBed narrowPeak
310
fastq
208
bed broadPeak
197
bed bed3+
186
tagAlign
171
bigBed broadPeak
157
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1625
Homo sapiens
Biosample type
1631
tissue
437
cell line
400
primary cell
177
in vitro differentiated cells
2
stem cell
Organ
479
connective tissue
421
adipose tissue
372
pancreas
245
liver
202
brain
114
heart
97
limb
92
kidney
71
blood vessel
vasculature
66
bone element
43
musculature of body
31
nerve
27
artery
18
ureter
16
spleen
8
skeleton
3
eye
1
pituitary gland
Project
1629
AMP
2
T1D
Genome assembly (visualization)
1592
GRCh38
1538
hg19
Lab
1606
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
May, 2021
organ_slims!
vasculature
target.investigated_as!
control
BIOSAMPLE
ASSAY
1631 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
single cell RNA-seq
FAIRE-seq
tissue
adipose tissue
381
1
2
islet of Langerhans
230
23
1
38
6
1
liver
147
82
2
1
bone tissue
58
body of pancreas
2
26
4
4
2
2
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