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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
901
total RNA-seq
253
ChIP-seq
177
DNase-seq
57
ATAC-seq
17
WGBS
16
small RNA-seq
6
single cell RNA-seq
4
FAIRE-seq
Assay category
923
Transcription
253
DNA binding
238
DNA accessibility
17
DNA methylation
Target of assay
460
histone modification
histone
242
narrow histone mark
217
broad histone mark
165
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
chromatin remodeller
Date released
452
February, 2021
166
May, 2020
163
June, 2019
131
August, 2017
116
July, 2018
64
July, 2019
44
October, 2018
41
December, 2017
41
October, 2019
39
November, 2019
38
May, 2021
26
May, 2019
26
November, 2018
24
May, 2022
20
April, 2019
12
November, 2017
October, 2017
7
December, 2018
7
March, 2020
6
April, 2018
6
September, 2017
1
January, 2019
1
March, 2019
Available data
1431
bam
1241
bigWig
1076
tsv
457
bed narrowPeak
292
fastq
247
bigBed narrowPeak
193
bed bed3+
177
bed broadPeak
176
bigBed broadPeak
157
txt
64
xls
50
tagAlign
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1430
Homo sapiens
Biosample type
1431
tissue
517
cell line
405
primary cell
209
in vitro differentiated cells
1
stem cell
Organ
496
connective tissue
438
adipose tissue
366
pancreas
237
liver
78
kidney
73
heart
66
bone element
66
limb
60
brain
38
musculature of body
33
blood vessel
33
vasculature
18
nerve
18
ureter
17
spleen
14
artery
8
skeleton
3
eye
Project
1431
AMP
Genome assembly (visualization)
1238
GRCh38
1227
hg19
Lab
1406
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
25
inconsistent control
2
inconsistent ontology term
Audit category:
18
missing controlled_by
month_released!
October, 2017
target.investigated_as!
chromatin remodeller
histone
BIOSAMPLE
ASSAY
1431 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
single cell RNA-seq
FAIRE-seq
tissue
adipose tissue
381
1
2
islet of Langerhans
266
14
1
38
6
1
liver
147
76
2
1
bone tissue
58
body of pancreas
2
18
4
2
2
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