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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
507
total RNA-seq
221
ChIP-seq
175
DNase-seq
61
ATAC-seq
15
WGBS
14
small RNA-seq
6
single cell RNA-seq
4
FAIRE-seq
Assay category
527
Transcription
240
DNA accessibility
221
DNA binding
15
DNA methylation
Target of assay
465
histone modification
histone
242
narrow histone mark
222
broad histone mark
148
control
72
transcription factor
18
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
166
May, 2020
162
June, 2019
116
July, 2018
115
August, 2017
66
February, 2021
54
July, 2019
43
December, 2017
41
October, 2019
38
May, 2021
38
November, 2019
26
May, 2019
25
November, 2018
24
May, 2022
21
October, 2018
20
April, 2019
12
November, 2017
8
October, 2017
7
December, 2018
7
March, 2020
6
April, 2018
6
September, 2017
1
January, 2019
1
March, 2019
Available data
1003
bam
830
bigWig
677
tsv
454
bed narrowPeak
262
fastq
240
bigBed narrowPeak
187
bed bed3+
176
bed broadPeak
174
bigBed broadPeak
157
txt
64
xls
51
tagAlign
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1002
Homo sapiens
Biosample type
1003
tissue
547
cell line
399
primary cell
212
in vitro differentiated cells
1
stem cell
Organ
497
connective tissue
adipose tissue
370
pancreas
239
liver
78
kidney
73
heart
66
bone element
66
limb
63
brain
38
musculature of body
33
blood vessel
33
vasculature
18
nerve
18
spleen
18
ureter
14
artery
8
skeleton
3
eye
Project
1003
AMP
Genome assembly (visualization)
827
GRCh38
817
hg19
Lab
978
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
6
missing controlled_by
organ_slims!
adipose tissue
vein
target.investigated_as!
histone
BIOSAMPLE
ASSAY
1003 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
single cell RNA-seq
FAIRE-seq
tissue
islet of Langerhans
266
14
1
38
6
1
liver
147
78
2
1
bone tissue
58
body of pancreas
2
18
4
4
2
2
heart
4
2
18
1
1
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