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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
422
total RNA-seq
264
ChIP-seq
44
ATAC-seq
12
DNase-seq
6
single cell RNA-seq
5
small RNA-seq
4
WGBS
2
FAIRE-seq
Assay category
433
Transcription
264
DNA binding
58
DNA accessibility
4
DNA methylation
Target of assay
133
histone modification
132
histone
75
control
70
narrow histone mark
62
broad histone mark
56
transcription factor
10
RNA binding protein
2
chromatin remodeller
Date released
193
May, 2020
153
August, 2017
116
July, 2018
51
October, 2018
48
December, 2017
48
October, 2019
38
November, 2019
36
May, 2021
24
May, 2022
14
November, 2018
11
July, 2019
6
April, 2018
6
September, 2017
4
June, 2019
4
March, 2020
4
October, 2017
2
May, 2019
1
March, 2019
Available data
759
bam
669
bigWig
434
tsv
296
fastq
263
bed narrowPeak
137
bigBed narrowPeak
86
tagAlign
35
bed bed3+
25
bed broadPeak
11
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
6
txt
4
bedpe bed3+
4
hic
1
bedpe
1
csv
Organism
752
Homo sapiens
Biosample type
759
tissue
429
cell line
206
primary cell
18
in vitro differentiated cells
Organ
498
connective tissue
440
adipose tissue
429
pancreas
288
liver
226
brain
132
heart
114
limb
98
kidney
87
blood vessel
87
vasculature
66
bone element
44
musculature of body
42
nerve
34
artery
24
spleen
18
ureter
8
skeleton
3
eye
1
pituitary gland
Project
757
AMP
2
T1D
Genome assembly (visualization)
674
hg19
652
GRCh38
Lab
734
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
27
inconsistent control
Audit category:
10
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
759 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
small RNA-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
266
30
38
1
6
1
liver
147
122
2
1
body of pancreas
2
35
4
4
2
2
tibial nerve
4
35
1
2
pancreas
1
16
2
2
1
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