Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ChIP-seq
13
DNase-seq
1
Hi-C
1
snATAC-seq
Assay category
28
DNA binding
14
DNA accessibility
1
3D chromatin structure
Target of assay
13
transcription factor
12
histone
12
histone modification
6
broad histone mark
6
narrow histone mark
3
control
2
RNA binding protein
Date released
June, 2019
26
August, 2017
9
November, 2018
4
October, 2019
2
September, 2017
1
March, 2019
1
May, 2022
Available data
1744
bam
1609
bigWig
1076
tsv
821
bed narrowPeak
398
bigBed narrowPeak
377
fastq
238
tagAlign
157
txt
64
xls
50
bed broadPeak
42
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
13
bigBed broadPeak
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
43
Homo sapiens
Biosample type
43
tissue
25
in vitro differentiated cells
13
primary cell
3
cell line
3
stem cell
Organ
24
pancreas
6
liver
5
adipose tissue
5
connective tissue
4
limb
2
artery
2
blood vessel
2
brain
2
nerve
2
vasculature
1
musculature of body
1
spleen
Project
43
AMP
Genome assembly (visualization)
43
hg19
41
GRCh38
Lab
42
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
1
audit script error
Audit category:
14
missing controlled_by
month_released!
June, 2019
BIOSAMPLE
ASSAY
43 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
Hi-C
snATAC-seq
tissue
islet of Langerhans
21
1
liver
3
2
white adipose tissue
4
body of pancreas
2
brain
2
+ See 6 more…
See all biosamples
Download