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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
140
DNase-seq
28
ChIP-seq
15
WGBS
9
RRBS
1
snATAC-seq
Assay category
141
DNA accessibility
28
DNA binding
24
DNA methylation
Target of assay
13
transcription factor
12
histone
12
histone modification
6
broad histone mark
6
narrow histone mark
3
control
2
RNA binding protein
Date released
131
June, 2019
31
August, 2017
15
November, 2018
13
July, 2019
2
September, 2017
1
May, 2022
Available data
1786
bam
1675
bigWig
1069
tsv
886
bed narrowPeak
471
bigBed narrowPeak
370
fastq
231
tagAlign
171
bed broadPeak
169
bed bed3+
157
txt
140
bigBed broadPeak
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
193
Homo sapiens
Biosample type
193
tissue
47
primary cell
25
in vitro differentiated cells
4
cell line
3
stem cell
Organ
69
kidney
limb
36
musculature of body
34
heart
33
pancreas
28
brain
18
ureter
8
adipose tissue
8
connective tissue
7
liver
6
blood vessel
6
vasculature
4
artery
3
eye
3
spleen
2
nerve
1
pericardium
Project
193
AMP
Genome assembly (visualization)
183
GRCh38
162
hg19
Lab
193
AMP-T2D consortium
Audit category:
1
audit script error
Audit category:
14
missing controlled_by
organ_slims!
limb
BIOSAMPLE
ASSAY
193 results
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DNase-seq
ChIP-seq
WGBS
RRBS
snATAC-seq
tissue
islet of Langerhans
21
1
heart
18
1
brain
14
1
kidney
13
1
renal cortex interstitium
11
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