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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
883
total RNA-seq
511
ChIP-seq
150
DNase-seq
39
ATAC-seq
15
small RNA-seq
10
WGBS
6
single cell RNA-seq
4
FAIRE-seq
1
snATAC-seq
Assay category
904
Transcription
511
DNA binding
194
DNA accessibility
10
DNA methylation
Target of assay
427
histone modification
426
histone
230
narrow histone mark
196
broad histone mark
81
transcription factor
17
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
444
February, 2021
179
August, 2017
170
May, 2020
153
October, 2019
136
June, 2019
116
July, 2018
78
May, 2019
57
November, 2017
46
July, 2019
45
October, 2018
36
December, 2017
36
May, 2021
23
November, 2018
21
May, 2022
19
November, 2019
18
April, 2019
14
October, 2017
9
March, 2020
6
April, 2018
6
January, 2019
3
December, 2018
2
January, 2018
2
September, 2017
Available data
1775
bam
1615
bigWig
965
tsv
811
bed narrowPeak
473
bigBed narrowPeak
377
fastq
238
tagAlign
186
bed broadPeak
178
bed bed3+
157
txt
149
bigBed broadPeak
64
xls
18
bed bedMethyl
18
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1613
Homo sapiens
Biosample type
1619
tissue
532
primary cell
467
cell line
269
in vitro differentiated cells
4
stem cell
Organ
481
connective tissue
423
adipose tissue
375
pancreas
266
liver
202
brain
heart
91
kidney
91
limb
70
blood vessel
70
vasculature
58
bone element
58
musculature of body
31
nerve
27
artery
18
ureter
16
spleen
3
eye
1
pituitary gland
Project
1617
AMP
2
T1D
Genome assembly (visualization)
1559
GRCh38
1542
hg19
Lab
1598
AMP-T2D consortium
20
Karen Mohlke, UNC
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
3
inconsistent ontology term
1
audit script error
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
September, 2018
organ_slims!
heart
BIOSAMPLE
ASSAY
1619 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
single cell RNA-seq
FAIRE-seq
snATAC-seq
tissue
adipose tissue
381
1
2
2
islet of Langerhans
260
31
1
3
6
1
liver
147
83
2
20
1
bone tissue
58
body of pancreas
2
26
4
4
2
2
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