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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
895
total RNA-seq
591
ChIP-seq
177
DNase-seq
43
ATAC-seq
16
WGBS
16
small RNA-seq
6
single cell RNA-seq
4
FAIRE-seq
1
snATAC-seq
Assay category
917
Transcription
591
DNA binding
225
DNA accessibility
16
DNA methylation
Target of assay
522
histone modification
521
histone
268
narrow histone mark
253
broad histone mark
93
transcription factor
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
444
February, 2021
177
August, 2017
170
May, 2020
163
June, 2019
160
October, 2019
116
July, 2018
89
May, 2019
63
July, 2019
62
April, 2019
57
November, 2017
38
May, 2021
35
May, 2024
34
December, 2017
34
October, 2018
23
November, 2018
21
May, 2022
19
November, 2019
14
October, 2017
11
March, 2020
6
April, 2018
6
January, 2019
3
December, 2018
2
January, 2018
2
September, 2017
Available data
1884
bam
1745
bigWig
1076
tsv
958
bed narrowPeak
541
bigBed narrowPeak
362
fastq
238
tagAlign
213
bed broadPeak
203
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1743
Homo sapiens
Biosample type
1749
tissue
532
primary cell
460
cell line
264
in vitro differentiated cells
4
stem cell
Organ
476
connective tissue
418
adipose tissue
367
pancreas
264
liver
202
brain
147
heart
91
kidney
91
limb
67
blood vessel
67
vasculature
58
bone element
58
musculature of body
31
nerve
26
artery
18
ureter
16
spleen
3
eye
1
pituitary gland
Project
1747
AMP
2
T1D
Genome assembly (visualization)
1688
GRCh38
1629
hg19
Lab
1693
AMP-T2D consortium
35
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
3
inconsistent ontology term
1
audit script error
Audit category:
24
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
September, 2018
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
1749 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
single cell RNA-seq
FAIRE-seq
snATAC-seq
tissue
adipose tissue
381
1
2
2
islet of Langerhans
260
29
1
3
6
1
liver
147
82
2
20
1
bone tissue
58
heart
4
12
18
1
1
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