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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
174
DNase-seq
24
ChIP-seq
11
Hi-C
1
snATAC-seq
Assay category
175
DNA accessibility
24
DNA binding
11
3D chromatin structure
Target of assay
12
histone
12
histone modification
9
transcription factor
6
broad histone mark
6
narrow histone mark
3
control
2
RNA binding protein
Date released
162
June, 2019
22
August, 2017
8
November, 2018
7
March, 2020
5
October, 2019
2
September, 2017
1
August, 2021
1
March, 2019
1
May, 2022
1
November, 2019
Available data
1467
bam
1349
bigWig
971
bed narrowPeak
677
tsv
551
bigBed narrowPeak
334
fastq
230
tagAlign
210
bed broadPeak
199
bed bed3+
174
bigBed broadPeak
157
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
210
Homo sapiens
Biosample type
210
tissue
40
primary cell
29
in vitro differentiated cells
5
cell line
3
stem cell
Organ
69
kidney
36
limb
35
musculature of body
30
heart
30
pancreas
27
brain
18
ureter
7
liver
adipose tissue
6
blood vessel
6
connective tissue
6
vasculature
4
artery
3
eye
2
nerve
1
spleen
Project
210
AMP
Genome assembly (visualization)
198
GRCh38
194
hg19
Lab
208
AMP-T2D consortium
1
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Audit category:
1
audit script error
1
inconsistent ontology term
Audit category:
10
missing controlled_by
lab.title!
Klaus Kaestner, Upenn
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
210 results
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Clear Filters
DNase-seq
ChIP-seq
Hi-C
snATAC-seq
tissue
islet of Langerhans
21
2
heart
18
1
muscle of arm
17
brain
14
kidney
13
1
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