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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
176
DNase-seq
22
ChIP-seq
1
snATAC-seq
Assay category
177
DNA accessibility
22
DNA binding
Target of assay
13
transcription factor
12
histone
12
histone modification
6
broad histone mark
narrow histone mark
3
control
2
RNA binding protein
Date released
163
June, 2019
20
August, 2017
9
November, 2018
4
October, 2019
2
September, 2017
1
May, 2022
Available data
1548
bam
1388
bigWig
956
tsv
655
bed narrowPeak
453
bigBed narrowPeak
347
fastq
199
bed bed3+
198
bed broadPeak
176
bigBed broadPeak
153
txt
128
tagAlign
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
Organism
199
Homo sapiens
Biosample type
199
tissue
35
primary cell
17
in vitro differentiated cells
3
cell line
2
stem cell
Organ
68
kidney
36
limb
33
musculature of body
27
brain
27
heart
21
pancreas
18
ureter
6
adipose tissue
6
connective tissue
6
liver
5
blood vessel
5
vasculature
4
artery
3
eye
2
nerve
1
spleen
Project
199
AMP
Genome assembly (visualization)
198
GRCh38
183
hg19
Lab
199
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
Audit category:
11
missing controlled_by
month_released!
February, 2023
July, 2018
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
199 results
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DNase-seq
ChIP-seq
snATAC-seq
tissue
heart
18
muscle of arm
17
islet of Langerhans
15
brain
14
kidney
13
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