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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
172
DNase-seq
28
ChIP-seq
1
snATAC-seq
Assay category
173
DNA accessibility
28
DNA binding
Target of assay
13
transcription factor
12
histone
12
histone modification
6
broad histone mark
6
narrow histone mark
3
control
2
RNA binding protein
Date released
161
June, 2019
26
August, 2017
9
November, 2018
2
October, 2019
2
September, 2017
1
May, 2022
Available data
1858
bam
1731
bigWig
1072
tsv
910
bed narrowPeak
530
bigBed narrowPeak
360
fastq
224
tagAlign
205
bed broadPeak
201
bed bed3+
172
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
201
Homo sapiens
Biosample type
201
tissue
37
primary cell
25
in vitro differentiated cells
3
cell line
3
stem cell
Organ
68
kidney
36
limb
33
musculature of body
27
brain
27
heart
27
pancreas
18
ureter
6
adipose tissue
6
connective tissue
6
liver
5
blood vessel
5
vasculature
artery
3
eye
2
nerve
1
spleen
Project
201
AMP
Genome assembly (visualization)
200
GRCh38
185
hg19
Lab
201
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
Audit category:
14
missing controlled_by
month_released!
October, 2017
month_released!!
October, 2017
organ_slims!
artery
BIOSAMPLE
ASSAY
201 results
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DNase-seq
ChIP-seq
snATAC-seq
tissue
islet of Langerhans
21
heart
18
muscle of arm
17
brain
14
kidney
13
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