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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
170
DNase-seq
7
ChIP-seq
1
snATAC-seq
Assay category
171
DNA accessibility
7
DNA binding
Target of assay
6
transcription factor
1
control
Date released
159
June, 2019
7
August, 2017
7
November, 2018
4
October, 2019
1
May, 2022
Available data
1478
bam
1399
bigWig
861
bed narrowPeak
799
tsv
499
bigBed narrowPeak
222
tagAlign
193
bed broadPeak
178
bed bed3+
170
bigBed broadPeak
164
fastq
151
txt
64
xls
19
bed bedMethyl
19
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
178
Homo sapiens
Biosample type
178
tissue
37
primary cell
25
in vitro differentiated cells
3
stem cell
1
cell line
Organ
68
kidney
36
limb
33
musculature of body
27
brain
27
heart
pancreas
18
ureter
6
adipose tissue
6
connective tissue
6
liver
5
blood vessel
5
vasculature
4
artery
3
eye
2
nerve
1
spleen
Project
178
AMP
Genome assembly (visualization)
177
GRCh38
164
hg19
Lab
178
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
Audit category:
4
missing controlled_by
organ_slims!
adrenal gland
pancreas
urinary bladder
BIOSAMPLE
ASSAY
178 results
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DNase-seq
ChIP-seq
snATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
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