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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
171
DNase-seq
35
ChIP-seq
15
WGBS
9
RRBS
2
ATAC-seq
Assay category
173
DNA accessibility
35
DNA binding
24
DNA methylation
Target of assay
35
histone
35
histone modification
20
broad histone mark
15
narrow histone mark
Date released
160
June, 2019
31
August, 2017
15
November, 2018
13
July, 2019
6
November, 2017
4
October, 2017
2
October, 2019
1
March, 2019
Available data
1820
bam
1702
bigWig
1062
tsv
884
bed narrowPeak
499
bigBed narrowPeak
377
fastq
238
tagAlign
208
bed broadPeak
200
bed bed3+
171
bigBed broadPeak
157
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
226
Homo sapiens
Biosample type
232
tissue
60
cell line
46
primary cell
1
in vitro differentiated cells
Organ
69
kidney
48
musculature of body
37
brain
37
limb
34
heart
26
pancreas
18
ureter
6
blood vessel
vasculature
5
adipose tissue
5
connective tissue
4
artery
4
liver
3
eye
3
spleen
2
nerve
1
pericardium
Project
232
AMP
Genome assembly (visualization)
201
GRCh38
200
hg19
Lab
230
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
1
inconsistent assembly
organ_slims!
vasculature
BIOSAMPLE
ASSAY
232 results
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Clear Filters
DNase-seq
ChIP-seq
WGBS
RRBS
ATAC-seq
tissue
heart
18
1
brain
14
3
1
muscle of arm
17
skeletal muscle tissue
13
2
kidney
13
1
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