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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
925
total RNA-seq
103
single cell RNA-seq
20
pCHi-C
16
WGBS
16
small RNA-seq
9
RRBS
3
snDrop-seq
2
RNA microarray
1
ATAC-seq
Assay category
1044
Transcription
25
DNA methylation
1
DNA accessibility
Date released
452
February, 2021
143
May, 2020
116
July, 2018
99
August, 2021
94
August, 2017
61
July, 2019
38
May, 2021
28
March, 2020
25
February, 2020
19
November, 2019
8
October, 2019
April, 2018
6
November, 2018
4
February, 2023
2
December, 2019
Available data
1901
bam
1766
bigWig
1070
tsv
984
bed narrowPeak
561
bigBed narrowPeak
371
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1095
Homo sapiens
Biosample type
1095
tissue
237
primary cell
131
in vitro differentiated cells
120
cell line
4
stem cell
Organ
459
connective tissue
401
adipose tissue
275
pancreas
155
liver
118
heart
58
bone element
24
brain
15
blood vessel
15
vasculature
13
kidney
10
musculature of body
8
limb
5
eye
5
nerve
4
artery
3
epithelium
3
spleen
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
1095
AMP
Genome assembly (visualization)
927
GRCh38
921
hg19
Lab
1094
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
7
audit script error
3
inconsistent ontology term
month_released!
April, 2018
BIOSAMPLE
ASSAY
1095 results
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total RNA-seq
single cell RNA-seq
pCHi-C
WGBS
small RNA-seq
RRBS
snDrop-seq
RNA microarray
ATAC-seq
tissue
adipose tissue
381
1
2
islet of Langerhans
261
1
1
liver
147
1
1
1
bone tissue
58
heart left ventricle
3
18
1
2
1
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